VA Palo Alto Lucile Packard Children's Hospital Stanford Hospital & Clinics Stanford University Santa Clara Valley Medical Departments Institutes School Home Stanford School of Medicine
MolePharm Site Only
Stanford Medicine
Department of Chemical and Systems Biology
Home
About Us
Faculty
Students
Resources
Calendar
Publications
News & Events
QCB
Latest News

Publications

Publications

Years:


Koyanagi T, Wong LY, Inagaki K, Petrauskene OV, Mochly-Rosen D. (2008) Alteration of Gene Expression During Progression of Hypertension-induced Cardiac Dysfunction in Rats. Am J Physiol Heart Circ Physiol [PubMed]

Chae YC, Kim JH, Kim KL, Kim HW, Lee HY, Heo WD, Meyer T, Suh PG, Ryu SH. (2008) Phospholipase D Activity Regulates Integrin-mediated Cell Spreading and Migration by Inducing GTP-Rac Translocation to the Plasma Membrane. Mol Biol Cell. [PubMed]

Pomerening JR, Ubersax JA, Ferrell JE Jr. (2008) Rapid Cycling and Precocious Termination of G1 Phase in Cells Expressing CDK1AF. Mol Biol Cell [PubMed]

Park WS, Heo WD, Whalen JH, O'Rourke NA, Bryan HM, Meyer T, Teruel MN. (2008) Comprehensive identification of PIP3-regulated PH domains from C. elegans to H. sapiens by model prediction and live imaging. Mol Cell. 30 (3): 529-33. [PubMed]

Hendrickson DG, Hogan DJ, Herschlag D, Ferrell JE, Brown PO. (2008) Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance. PLoS ONE 3 (5): e2126. [PubMed]

Reich SG, Meyer T. (2008) Teaching video NeuroImage: Spasmodic dysphonia: adductor and abductor. Neurology 70 (19) [PubMed]

Karahaliou PK, Kouwer PH, Meyer T, Mehl GH, Photinos DJ. (2008) Long- and Short-Range Order in the Mesophases of Laterally Substituted Calamitic Mesogens and their Radial Octapodes. J Phys Chem B. 112 (21): 6550-6. [PubMed]

Ferrell, JE, Jr. (2008) Feedback regulation of opposing enzymes generates robust, all-or-none bistable responses. Curr Biol. 18 (6): R244-5. [PubMed]

Ríos-Cardona D, Ricardo-González RR, Chawla A, Ferrell JE Jr. (2008) A role for GPRx, a novel GPR3/6/12-related G-protein coupled receptor, in the maintenance of meiotic arrest in Xenopus laevis oocytes. Dev Biol. [PubMed]

Kvezereli M, Vallentin A, Mochly-Rosen D, Busque S, Fontaine MJ. (2008) Islet cell survival during isolation improved through protein kinase C epsilon activation. Transplant Proc. 40 (2): 375-8. [PubMed]

Esengil H, Chen JK. (2008) Gene regulation technologies in zebrafish. Mol Biosyst. 4: 300-8. [PubMed]

Kaneda H, Ikeno F, Inagaki K, Mochly-Rosen D. (2008) Preserved coronary endothelial function by inhibition of delta protein kinase C in a porcine acute myocardial infarction model. Int J CArdiol [PubMed]

Grimley JS, Chen DA, Banaszynski LA, Wandless TJ. (2008) Synthesis and analysis of stabilizing ligands for FKBP-derived destabilizing domains. Bioorg Med Chem Lett. 18 (2): 759-61. [PubMed]

Fivaz M, Bandara S, Inoue T, Meyer T. (2008) Robust neuronal symmetry breaking by Ras-triggered local positive feedback. Curr Biol. 18 (1): 44-50. [PubMed]

Qi X, Inagaki K, Sobel RA, Mochly-Rosen D. (2008) Sustained pharmacological inhibition of deltaPKC protects against hypertensive encephalopathy through prevention of blood-brain barrier breakdown in rats. J Clin Invest 118 (1): 173-82. [PubMed]

Pham NM, Recht NS, Hostetter TH, Meyer TW. (2008) Removal of the protein-bound solutes indican and p-cresol sulfate by peritoneal dialysis. Clin J Am Soc Nephrol 3 (1): 85-90. [PubMed]

Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, (2008) The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res. 36: D1009-14. [PubMed]

Churchill E, Budas G, Vallentin A, Koyanagi T, Mochly-Rosen D (2008) PKC isozymes in chronic cardiac disease: possible therapeutic targets? Annu Rev Pharmacol Toxicol. 48: 569-99. [PubMed]

Brandman O, Liou J, Park WS, Meyer T. (2007) STIM2 is a feedback regulator that stabilizes basal cytosolic and endoplasmic reticulum Ca2+ levels. Cell. 131 (7): 1327-39. [PubMed]

Poon AC, Ferrell JE Jr. (2007) Systems biology. A clock with a flip switch. Science 318 (5851): 757-8. [PubMed]

Swigut T, Wysocka J. (2007) H3K27 Demethylases, at Long Last. Cell 131 (1): 29-32. [PubMed]

Meyer TW, Hostetter TH. (2007) Uremia N Engl J Med. 357 (13): 1316-25. [PubMed]

Maynard-Smith LA, Chen LC, Banaszynski LA, Ooi AG, Wandless TJ. (2007) A directed approach for engineering conditional protein stability using biologically silent small molecules. J Biol Chem 282 (3): 24866-72. [PubMed]

Shestopalov IA, Shinha S, Chen JK. (2007) Light-controlled gene silencing in zebrafish embryos. Nat Chem Biol. 3 (10): 650-1. [PubMed]

Qi X, Vallentin A, Churchill E, Mochly-Rosen D. (2007) deltaPKC participates in the endoplasmic reticulum stress-induced response in cultured cardiac myocytes and ischemic heart. J Mol Cell Cardiol 43 (4): 420-8. [PubMed]

Stankunas K, Bayle JH, Havranek JJ, Wandless TJ, Baker D, Crabtree GR, Gestwicki JE. (2007) Rescue of Degradation-prone mutants of the FK506-rapamycin binding (FRB) protein with chemical ligands. Chembiochem 8 (10): 1162-9. [PubMed]

Paulsen RD, Cimprich KA. (2007) The ATR pathway: fine-tuning the fork. DNA Repair (AMST). 6 (7): 953-66. [PubMed]

Liou J, Fivaz M, Inoue T, Meyer T. (2007) Live-cell imaging reveals sequential oligomerization and local plasma membrane targeting of stromal interaction molecule 1 after Ca2+ store depletion. Proc Natl Acad Sci USA 104 (22): 9301-6. [PubMed]

Sellmyer, M. A.; Stankunas, K.; Briesewitz, R.; Crabtree, G. R.; Wandless, T. J. (2007) Engineering Small Molecule Specificity in Nearly Identical Cellular Environments. Bioorg. Med. Chem. Lett 17 (10): 2703-2705. [PubMed]

Edwards SR, Wandless TJ. (2007) The rapamycin-binding domain of the protein kinase mammalian target of rapamycin is a destabilizing domain. J Biol Chem 282 (18): 13395-401. [PubMed]

Bright R, Steinberg GK, Mochly-Rosen D. (2007) DeltaPKC mediates microcerebrovascular dysfunction in acute ischemia and in chronic hypertensive stress in vivo. Brain Res. 1144: 1146-55. [PubMed]

Budas GR, Churchill EN, Mochly-Rosen D. (2007) Cardioprotective mechanisms of PKC isozyme-selective activators and inhibitors in the treatment of ischemia-reperfusion injury. Pharmacol Res. 55 (6): 523-536. [PubMed]

Kainz A, Perco P,Mayer B, Soleiman A, Steinger R, Mayer G, Mitterbauer C, Schwarz C, Meyer TW, Oberbauer R. (2007) Gene-expression profiles and age of donor kidney biopsies obtained before transplantation distinguish medium term graft function. Transplantation 83 (8): 1048-54. [PubMed]

MacDougall CA, Byun TS, Van C, Yee MC, Cimprich KA. (2007) The structural determinants of checkpoint activation. Genes Dev. 21 (8): 879-85. [PubMed]

Kim SY, Ferrell JE Jr. (2007) Substrate competition as a source of ultrasensitivity in the inactivation of Wee1. Cell 128 (6): 1133-45. [PubMed]

Ikeno F, Inagaki K, Rezaee M, Mochly-Rosen D. (2007) Impaired perfusion after myocardial infarction is due to reperfusion-induced deltaPKC-mediated myocardial damage. Cardiovasc Res. 73 (4): 699-709. [PubMed]

Serber Z, Ferrell JE Jr. (2007) Tuning bulk electrostatics to regulate protein function. Cell 128 (3): 519-31. [PubMed]

Brandman R, Disatnik MH, Churchill E, Mochly-Rosen D. (2007) Peptides derived from the C2 domain of protein kinase C epsilon (epsilon PKC) modulate epsilon PKC activity and identify potential protein-protein interaction surfaces. J Biol Chem 282 (6): 4113-23. [PubMed]

Mamidipudi V, Miller LD, Mochly-Rosen D, Cartwright CA. (2007) Peptide modulators of Src activity in G1 regulate entry into S phase and proliferation of NIH 3T3 cells. Biochem Biophys Res Commun. 352 (2): 423-30. [PubMed]

Vallentin A, Mochly-Rosen D. (2007) RBCK1, a protein kinase CbetaI (PKCbetaI)-interacting protein, regulates PKCbeta-dependent function. J Biol Chem 282 (3): 1650-7. [PubMed]

Stone M, Jia S, Heo WD, Meyer T, Konan KV. (2007) Participation of rab5, an early endosome protein, in hepatitis C virus RNA replication machinery. J Virol 81 (9): 4551-63. [PubMed]

Burney RO, Lee AI, Leong DE, Jones JT, Hahn AT, Meyer T, Yao MW. (2007) A transgenic mouse model for high content, cell cycle phenotype screening in live primary cells. Cell Cycle 6 (18): 2276-83. [PubMed]

Cimprich KA. (2007) Probing ATR activation with model DNA templates. Cell Cycle 6 (19): 2348-54. [PubMed]

Koyanagi T, Noguchi K, Ootani A, Inagaki K, Robbins RC, Mochly-Rosen D. (2007) Pharmacological inhibition of epsilon PKC suppresses chronic inflammation in murine cardiac transplantation model. J Mol Cell Cardiol. 43 (4): 517-22. [PubMed]

Koyanagi T, Noguchi K, Ootani A, Inagaki K, Robbins RC, Mochly-Rosen D. (2007) Pharmacological inhibition of epsilon PKC suppresses chronic inflammation in murine cardiac transplantation model. J Mol Cell Cardiol. 43 (4): 517-22.

Grimley JS, Sawayama AM, Tanaka H, Stohlmeyer MM, Woiwode TF, Wandless TJ. (2007) The enantioselective synthesis of phomopsin B. Angew Chem Int Ed Engl. 46 (43): 8157-9. [PubMed]

Budas GR, Koyanagi T, Churchill EN, Mochly-Rosen D. (2007) Competitive inhibitors and allosteric activators of protein kinase C isoenzymes: a personal account and progress report on transferring academic discoveries to the clinic. Biochem Soc Trans. 35: 1021-6.

Churchill EN, Mochly-Rosen D. (2007) The roles of PKCdelta and epsilon isoenzymes in the regulation of myocardial ischaemia/reperfusion injury. Biochem Soc Trans. 35 (5): 1040+2. [PubMed]

Budas GR, Mochly-Rosen D (2007) Mitochondrial protein kinase Cepsilon (PKCepsilon): emerging role in cardiac protection from ischaemic damage. Biochem Soc Trans. 35 (5): 1052-4. [PubMed]

Galvez T, Teruel MN, Heo WD, Jones JT, Kim ML, Liou J, Myers JW, Meyer T. (2007) siRNA screen of the human signaling proteome identifies the PtdIns(3,4,5)P3-mTOR signaling pathway as a primary regulator of transferrin uptake. Genome Biol. 8 (7): R142. [PubMed]

Stone M, Jia s, Heo WD,Meyer T, Konan KV. (2007) Participation of rab5,an early endosome protein, in hepatitis C virus RNA replication machinery. J Virol 81 (9): 4551-63. [PubMed]

Lupardus PJ, Van C. Cimprich Ka. (2007) Analyzing the ATR-mediated checkpoint using Xenopus egg extracts. Methods 41 (2): 222-31. [PubMed]

Meyer TW, Peattie JW, Miller JD, Dinh DC, Recht NS, Walther JL, Hostetter TH. (2007) Pharmacological inhibition of epsilon PKC suppresses chronic inflammation in murine cardiac transplantation model. J AM Soc Nephrol. 18 (3): 675-6. [PubMed]

Ubersax JA, Ferrell JE Jr. (2007) Mechanisms of specificity in protein phosphorylation. Nat Rev Mol Cell Biol. 8 (7): 530-41. [PubMed]

Shimohata T, Zhao H, Sung JH,Sun G, Mochly-Rosen D, Steinberg GK (2007) Suppression of deltaPKC activation after focal cerebral ischemia contributes to the protective effect of hypothermia. J Cereb Blood Flow Metab. 27 (8): 1463-75. [PubMed]

Liron T, Chen LE, Khaner H, Vallentin A, Mochly-Rosen D. (2007) Rational design of a selective antagonist of epsilon protein kinase C derived from the selective allosteric agonist, pseudo-RACK peptide. J Mol Cell Cardiol 42 (4): 835-41. [PubMed]

Siwko S, Mochly-Rosen D. (2007) Use of a novel method to find substrates of protein kinase C delta identifies M2 pyruvate kinase. Int J Biochem Cell Biol. 39 (5): 978-87. [PubMed]

Kheifets V, Mochly-Rosen D. (2007) Insight into intra- and inter-molecular interactions of PKC: design of specific modulators of kinase function. Pharmacol Res. 55 (6): 467-476. [PubMed]

Berdeaux, R.; Goebel, N., Banaszynski, L, A.; Takemori, H.; Wandless, T. J.; Shelton, G. D.; Montminy, M. SIK1 is a Class II HDAC Kinase that Promotes Survival of Skeletal Myocytes. (2007) SIK1 is a Class II HDAC Kinase that Promotes Survival of Skeletal Myocytes. Nature Medicine 13: 597-603.

Esengil, H., Chang, V., Mich, J.K., and Chen, J.K. (2007) Small-molecule regulation of zebrafish gene expression. Nature Chemical Biology 3: 154-5. [PubMed]


Publications Administration